Below is the link to the repo containing lecture notes for the PhD-level “Special Topics in Biostatistics and Bioinformatics” course that I instructed in 2022. Although there wasn’t any pre-requisites, this course aimed to build on previous courses in the bioinformatics PhD curriculum to deliver common practical applications of bioinformatics approaches.
https://github.com/egeulgen/BB512_BB612_21_22
BB512/BB612 - Special Topics in Biostatistics and Bioinformatics - Spring 2022 ================
| Week | Date | Subject | HW | R |
|---|---|---|---|---|
| 1 | 2022-03-03 | Introduction | ||
| 2 | 2022-03-10 | Exploratory Data Analysis | EDA | |
| 3 | 2022-03-17 | Clustering/Dimensionality Reduction | HW1 | Clustering |
| 4 | 2022-03-24 | Review of HW1 | ||
| 5 | 2022-03-31 | Batch Effects and Confounders | Batch | |
| 6 | 2022-04-07 | Inference | HW2 | Inference |
| 7 | 2022-04-14 | Review of HW2 | ||
| 8 | 2022-04-21 | Gene Set Enrichment | Enrichment | |
| 9 | 2022-04-28 | Gene Expression Analysis | HW3 | Gene Expresion |
| 10 | 2022-05-05 | Review of HW3 | ||
| 11 | 2022-05-12 | Next Generation Genomics Sequencing Analysis | Final project | |
| 12 | 2022-05-19 | National Holiday | ||
| 13 | 2022-05-26 | No Class | ||
| 14 | 2022-06-02 | Review of Final Projects |