Create HTML Report of pathfindR Results

Source: R/utility.R

Create HTML Report of pathfindR Results

create_HTML_report(input, input_processed, final_res, dir_for_report)

Arguments

input

the input data that pathfindR uses. The input must be a data frame with three columns:

  1. Gene Symbol (Gene Symbol)

  2. Change value, e.g. log(fold change) (OPTIONAL)

  3. p value, e.g. adjusted p value associated with differential expression

input_processed

processed input data frame

final_res

final pathfindR result data frame

dir_for_report

directory to render the report in