Retrieve Gene Sets from GMT-format File

Source: R/data_generation.R

Retrieve Gene Sets from GMT-format File

gset_list_from_gmt(path2gmt, descriptions_idx = 2)

Arguments

path2gmt

path to the gmt file

descriptions_idx

index for descriptions (default = 2)

Value

list containing 2 elements:

  • gene_sets - A list containing the genes involved in each gene set

  • descriptions - A named vector containing the descriptions for each gene set