Input Testing

input_testing(input, p_val_threshold = 0.05)

Arguments

input the input data that pathfindR uses. The input must be a data frame with three columns: Gene Symbol (Gene Symbol) Change value, e.g. log(fold change) (OPTIONAL) p value, e.g. adjusted p value associated with differential expression the p value threshold to use when filtering the input data frame. Must a numeric value between 0 and 1. (default = 0.05)

Value

Only checks if the input and the threshold follows the required specifications.

See run_pathfindR for the wrapper function of the pathfindR workflow
input_testing(RA_input, 0.05)