Input Testing

input_testing(input, p_val_threshold = 0.05)



the input data that pathfindR uses. The input must be a data frame with three columns:

  1. Gene Symbol (Gene Symbol)

  2. Change value, e.g. log(fold change) (OPTIONAL)

  3. p value, e.g. adjusted p value associated with differential expression


the p value threshold to use when filtering the input data frame. Must a numeric value between 0 and 1. (default = 0.05)


Only checks if the input and the threshold follows the required specifications.

See also

See run_pathfindR for the wrapper function of the pathfindR workflow


input_testing(example_pathfindR_input, 0.05)
#> ## Testing input
#> The input looks OK