Summarize Enrichment Results

summarize_enrichment_results(enrichment_res, list_active_snw_genes = FALSE)

Arguments

enrichment_res

a dataframe of combined enrichment results. Columns are:

ID: ID of the enriched term
Term_Description: Description of the enriched term
Fold_Enrichment: Fold enrichment value for the enriched term
p_value: p value of enrichment
adj_p: adjusted p value of enrichment
non_Signif_Snw_Genes (OPTIONAL): the non-significant active subnetwork genes, comma-separated

list_active_snw_genes

boolean value indicating whether or not to report the non-significant active subnetwork genes for the active subnetwork which was enriched for the given term with the lowest p value (default = FALSE)

Value

a dataframe of summarized enrichment results (over multiple iterations). Columns are:

ID: ID of the enriched term
Term_Description: Description of the enriched term
Fold_Enrichment: Fold enrichment value for the enriched term
occurrence: the number of iterations that the given term was found to enriched over all iterations
support: the median support (proportion of active subnetworks leading to enrichment within an iteration) over all iterations
lowest_p: the lowest adjusted-p value of the given term over all iterations
highest_p: the highest adjusted-p value of the given term over all iterations
non_Signif_Snw_Genes (OPTIONAL): the non-significant active subnetwork genes, comma-separated

Examples

if (FALSE) { # \dontrun{
summarize_enrichment_results(enrichment_res)
} # }